Alpha-SiO2: Difference between revisions

Revision as of 12:16, 24 February 2017

Exercise : Determine the ¹⁷O C_q value and the Si and O schieldings.

α-SiO₂ crystallizes in the trigonal P3₁2 space group.

a = b = 4.604 Å; c = 5.207 Å

α = β = 90°; γ = 120°

The unit cell contains two independent atoms (1 Si and 1 O) with 3 formula units (SiO₂) per unit cell (Z=3). SiO₄ tetrahedron units are linked together by corner sharing.

In this exercise one wants first to calculate the EFG tensor components of ¹⁷O. This is very fast task calculated at the end of the first SCF calculation (ground state property). The experimental values for the C_q is 5.19 MHz. The nuclear quadrupolar momentum used to transform EFG in C_q is Q = 2.55 10^-30 m² (see the paper of Profeta et al. (http://pubs.acs.org/doi/abs/10.1021/ja027124r) (Silicon has a 1/2 nuclear spin, so Q is zero)

In a second step one wants to calculate the shielding parameters for Si and O. This is done using the linear response using the GIPAW formalism. As the calculation is quite time consuming, only very few k-points and small ENCUT are used with standard PAW data sets. The calculated shielding tensors components can be compared to the ones obtained by Profeta et al.

INCAR

  SYSTEM      = Si O2

  GGA          = PE
  ISTART       = 1
  ICHARG       = 0
  INIWAV       = 1
  LREAL        =  AUTO
  ISYM         = 2
  ISPIN        = 1

Ionic minimisation
  NSW          = 0
  ISIF         = 2
  IBRION       = 2
#  EDIFFG        = -2E-2
  POTIM        = 0.1

Electronic minimisation
  IALGO        = 38

  LWAVE        = .TRUE.

  EMIN         =   -20.0
  EMAX         =   10.0
  NEDOS        = 1601

EFG Calculation
  LEFG         = .TRUE.
  QUAD_EFG     = 0.0 25.5

Chemical Shift
  PREC         = Normal    # nice
  ENCUT        = 400.0      # typically higher cutoffs than usual are needed
  ISMEAR = 0; SIGMA= 0.1 # no fancy smearings, SIGMA sufficiently small
  EDIFF        = 1E-9      # you'd need much smaller EDIFFs.

  LCHIMAG      = .TRUE.   # to switch on linear response for chemical shifts
  DQ           = 0.001         # often the default is sufficient
  ICHIBARE     = 1       # often the default is sufficient
  LNMR_SYM_RED = .TRUE. # be on the safe side
  NLSPLINE     = .TRUE.  # only needed if LREAL is NOT set.
  LREAL        = A          # helps for speed for large systems, not needed
  NBANDS       = 30       # to safe memory, ??? = NELECT/2

KPOINTS

automatic mesh
0
Auto
20

POSCAR

O2 Si1
   1.00000000000000
     4.6040000915999997    0.0000000000000000    0.0000000000000000
    -2.3020000457999998    3.9871810383000001    0.0000000000000000
     0.0000000000000000    0.0000000000000000    5.2069997787000002
   Si   O
     3     6
Direct
  0.4436617824484789 -0.0000000000000000  0.3333333429999996
 -0.0000000000000000  0.4436617824484789  0.6666666870000029
  0.5563382175515210  0.5563382175515210 -0.0000000000000000
  0.3926661416221499  0.3062177364999842  0.2428214976299141
  0.6937822635000156  0.0864484051221655  0.5761548406299137
  0.9135515948778347  0.6073338583778505  0.9094881546299145
  0.3062177364999842  0.3926661416221499  0.7571785323700884
  0.0864484051221655  0.6937822635000156  0.4238451593700863
  0.6073338583778505  0.9135515948778347  0.0905118383700884

Download

SiO2_NMR.tgz

Used INCAR Tags

DQ,EDIFF,EDIFFG,EMAX,EMIN,ENCUT,GGA,IALGO,IBRION,ICHARG,ICHIBARE,INIWAV,ISIF,ISMEAR,ISPIN,ISTART,ISYM,LCHIMAG,LEFG,LNMR_SYM_RED,LREAL,LWAVE,NBANDS,NEDOS,NLSPLINE,NSW,POTIM,PREC,QUAD_EFG,SYSTEM

To the list of examples or to the main page

@@ Line 19: / Line 19: @@
 The calculated shielding tensors components can be compared to the ones obtained by Profeta ''et al.''
-*INCAR
+*{{TAG|INCAR}}
 <pre>
    SYSTEM      = Si O2
@@ Line 66: / Line 66: @@
 </pre>
-*KPOINTS
+*{{TAG|KPOINTS}}
 <pre>
 automatic mesh
@@ Line 74: / Line 74: @@
 </pre>
-*POSCAR
+*{{TAG|POSCAR}}
 <pre>
 O2 Si1
@@ Line 98: / Line 98: @@
 [http://www.vasp.at/vasp-workshop/examples/SiO2_NMR.tgz SiO2_NMR.tgz]
+== Used INCAR Tags ==
+{{TAG|DQ}},{{TAG|EDIFF}},{{TAG|EDIFFG}},{{TAG|EMAX}},{{TAG|EMIN}},{{TAG|ENCUT}},{{TAG|GGA}},{{TAG|IALGO}},{{TAG|IBRION}},{{TAG|ICHARG}},{{TAG|ICHIBARE}},{{TAG|INIWAV}},{{TAG|ISIF}},{{TAG|ISMEAR}},{{TAG|ISPIN}},{{TAG|ISTART}},{{TAG|ISYM}},{{TAG|LCHIMAG}},{{TAG|LEFG}},{{TAG|LNMR_SYM_RED}},{{TAG|LREAL}},{{TAG|LWAVE}},{{TAG|NBANDS}},{{TAG|NEDOS}},{{TAG|NLSPLINE}},{{TAG|NSW}},{{TAG|POTIM}},{{TAG|PREC}},{{TAG|QUAD_EFG}},{{TAG|SYSTEM}}
 ----
 [[VASP_example_calculations|To the list of examples]] or to the [[The_VASP_Manual|main page]]
 [[Category:Examples]]