Linking to libraries: Difference between revisions
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: To link against a static library object (<code>*.a</code>), for instance for scaLAPACK, replace the <code>SCALAPACK</code> line above by: | : To link against a static library object (<code>*.a</code>), for instance for scaLAPACK, replace the <code>SCALAPACK</code> line above by: | ||
:<pre>SCALAPACK = $(LIBDIR)/libscalapack.a</pre> | :<pre>SCALAPACK = $(LIBDIR)/libscalapack.a</pre> | ||
= fftw library (mandatory) = | = fftw library (mandatory) = | ||
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---- | ---- | ||
[[Category:VASP]][[Category:Installation]][[Category:Performance]][[Category:GPU | [[Category:VASP]][[Category:Installation]][[Category:Performance]][[Category:GPU]] |
Latest revision as of 06:30, 21 February 2024
The link is specified by linker variables and then the linker is invoked as:
$(FCL) -o vasp ..all-objects.. $(LLIBS)
It is mandatory to link VASP to a library for Fast-Fourier transformations (FFT), the lib library, the parser library, and the linear algebra libraries BLAS, LAPACK, and scaLAPACK, as well as for the OpenACC GPU port NVIDIA HPC-SDK (≧21.2). Other libraries, e.g., the HDF5 library and Wannier90, are optional.
Linker variables
FCL
- The command that invokes the linker. In most cases:
FCL=$(FC) [+ some options]
- Using the Intel Composer suite (Fortran compiler + MKL libraries), typically:
FCL=$(FC) -mkl=sequential
LLIBS
- Specify libraries and/or objects to be linked against, in the usual way:
LLIBS=[-L/path/to/installation/lib -llibrary] [/path/to/file/library.a] [/path/to/file/object.o]
- One has to specify several numerical libraries (BLAS, LAPACK or scaLAPACK, etc).
- For instance, using the Intel Composer suite (and compiling with
CPP_OPTIONS= .. -DscaLAPACK ..
) this yields:
MKL_PATH = $(MKLROOT)/lib/intel64 BLACS = -lmkl_blacs_intelmpi_lp64 SCALAPACK = $(MKL_PATH)/libmkl_scalapack_lp64.a $(BLACS) LLIBS += $(SCALAPACK)
The list of default objects required to compile VASP is given by the variable SOURCE
in the /path/to/vasp.X.X.X/src/.objects
file.
Objects to be added to this list can be specified in makefile.include
by means of:
OBJECTS= .. your list of objects ..
In practice, several objects must be added in this manner, e.g., FFT libraries.
Libraries for linear algebra (mandatory)
To build VASP, you need to link against BLAS, LAPACK, and scaLAPACK. Some compiler suites, e.g., the Intel Composer suite, pre-package these libraries, so there is no need to download and build them yourself.
- Using the Intel Composer suite, linking against the BLAS, LAPACK, and scaLAPACK libraries that are part of MKL is done as follows:
FCL = mpiifort -mkl=sequential MKL_PATH = $(MKLROOT)/lib/intel64 BLAS = LAPACK = BLACS = -lmkl_blacs_intelmpi_lp64 SCALAPACK = $(MKL_PATH)/libmkl_scalapack_lp64.a $(BLACS) LLIBS += $(SCALAPACK) $(LAPACK) $(BLAS)
- In case you use Intel's compilers with OpenMPI instead of Intel-MPI replace the
BLACS
line above by: BLACS = -lmkl_blacs_openmpi_lp64
- For NVIDIA HPC-SDK (>=21.2) that is:
BLAS = -lblas LAPACK = -llapack SCALAPACK = -Mscalapack LLIBS += $(SCALAPACK) $(LAPACK) $(BLAS)
- When you have built BLAS, LAPACK, and scaLAPACK yourself, you should link against the corresponding shared-objects (
lib*.so
) as follows:
LIBDIR = /path/to/my/libs/ BLAS = -L$(LIBDIR) -lrefblas LAPACK = -L$(LIBDIR) -ltmglib -llapack SCALAPACK = -L$(LIBDIR) -lscalapack LLIBS += $(SCALAPACK) $(LAPACK) $(BLAS)
- To link against a static library object (
*.a
), for instance for scaLAPACK, replace theSCALAPACK
line above by: SCALAPACK = $(LIBDIR)/libscalapack.a
fftw library (mandatory)
This library provides routines to perform Fast Fourier transformations (FFTs).
OBJECTS
- Add the objects to be compiled (or linked against) that provide the FFTs (may include static libraries of objects
*.a
). - Most probably you are building with
-DMPI
and want use the FFTs from some fftw library (recommended). In that case: OBJECTS = fftmpiw.o fftmpi_map.o fftw3d.o fft3dlib.o
INCS
- For the fftw library, i.e.,
OBJECTS= .. fftw3d.o fftmpiw.o ..
- the variable
INCS
must be set to include the directory that holdsfftw3.f
: INCS+=-I/path/to/fftw/installation
- This is needed because
fftw3d.F
andfftmpiw.F
includefftw3.f
.
Mind: If INCS
for fftw library is not set, thenfftw3.f
has to be present in/path/to/vasp.X.X.X/src
.
Common choices are:
- When building with the Intel Composer suite it is best to link against the MKL fftw wrappers of Intel's FFTs:
FCL = $(FC) -mkl=sequential OBJECTS = fftmpiw.o fftmpi_map.o fftw3d.o fft3dlib.o INCS += -I$(MKLROOT)/include/fftw
- To explicitly link against an fftw library (in this case fftw-3.3.4):
OBJECTS = fftmpiw.o fftmpi_map.o fftw3d.o fft3dlib.o FFTW ?= /path/to/your/fftw-3.3.4 LLIBS += -L$(FFTW)/lib -lfftw3 INCS += -I$(FFTW)/include
- For other configurations, please take lead from the
makefile.include.your_choice
files in /path/to/vasp.x.x.x/arch or look at the makefile.include.
Based on past experience the optimization level for the compilation of the FFT-related objects is set explicitly. This is done as follows:
OBJECTS_O1 += fft3dfurth.o fftw3d.o fftmpi.o fftmpiw.o OBJECTS_O2 += fft3dlib.o
lib library (mandatory)
The source of this library is included in the VASP distribution. The following variables are related to its configuration:
CPP_LIB
- The command to invoke the precompiler. In most cases, it is set to:
CPP_LIB=$(CPP)
FC_LIB
- The command to invoke your Fortran compiler. Usually, set to:
FC_LIB=$(FC)
Mind: The library can be compiled without MPI support, i.e., when FC=mpif90
, FC_LIB may specify a Fortran compiler without MPI support, e.g.,FC_LIB=ifort
.
FFLAGS_LIB
- Fortran compiler flags, including a specification of the level of optimization. In most cases:
FFLAGS_LIB=-O1
FREE_LIB
- Specifies the options that the Fortran compiler requires to accept free-form source layout, without line-length limitation. In most cases, it will suffise to set:
FREE_LIB=$(FREE)
CC_LIB
- The command to invoke your C compiler, e.g., gcc, icc, etc.
Mind: The lib library can be compiled without MPI support.
CFLAGS_LIB
- C compiler flags, including a specification of the level of optimization. In most cases:
CFLAGS_LIB=-O
OBJECTS_LIB
- List of "non-standard" objects to be added to the library. In most cases:
OBJECTS_LIB= linpack_double.o
- When compiling VASP with -Duse_shmem, one has to add
getshmem.o
as well, i.e., add the following line: OBJECTS_LIB+= getshmem.o
parser library (mandatory)
The source of this library is included in the VASP distribution. The following variables are related to its configuration:
CXX_PARS
- The command to invoke your C++ compiler, e.g., g++, icpc, etc.
The parser needs to be linked against a C++ Standard library.
If this is not already part of the definition of FCL
it can be added to the compiler option LLIBS
.
When using the Intel Composer suite this would amount to:
LLIBS += -lstdc++
QD library
The QD library is included in NVIDIA HPC SDK ≧ 21.2 and supports quadruple precision arithmetic. Add the following lines to your makefile.include:
NVROOT ?= /path/to/nvidia/hpc_sdk/Linux_x86_64/version QD ?= $(NVROOT)/compilers/extras/qd LLIBS += -L$(QD)/lib -lqdmod -lqd INCS += -I$(QD)/include/qd
Tip: The following line might help to find the NVIDIA root: |
NVROOT =$(shell which nvfortran | awk -F /compilers/bin/nvfortran '{ print $$1 }')
Important: As of NVIDIA HPC SDK = 21.2, the library path of the QD library needs to be added manually to the system environment: |
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$(NVROOT)/compilers/extras/qd/lib
Optional libraries
See how to customize the makefile.include file to find an overview of optional libraries.
Related articles
Installing VASP.6.X.X, makefile.include, Compiler options, Precompiler options, OpenACC GPU port of VASP, Toolchains, Validation tests, Known issues