Category:Interface pinning: Difference between revisions
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'''Interface pinning'''{{cite|pedersen:prb:13}} is used to determine the melting point from a [[:Category: Molecular dynamics|molecular-dynamics]] simulation of the interface between a liquid and a solid phase. | |||
Interface | <!-- == Theory == --> | ||
The typical behavior of such a simulation is to freeze or melt, while the interface is ''pinned'' with a bias potential. | |||
This potential applies an energy penalty for deviations from the desired two-phase system. | |||
It is preferred simulating above the melting point because the bias potential prevents melting better than freezing. | |||
The Steinhardt-Nelson order parameter <math>Q_6</math> | The Steinhardt-Nelson{{cite|steinhardt:prb:83}} order parameter <math>Q_6</math> discriminates between the solid and the liquid phase. | ||
With the bias potential | |||
<math>U_\ | :<math>U_\text{bias}(\mathbf{R}) = \frac\kappa2 \left(Q_6(\mathbf{R}) - A\right)^2 </math> | ||
penalizes differences between the order parameter for the current configuration <math>Q_6({\mathbf{R}})</math> and the one for the desired interface <math>A</math>. | |||
<math>\kappa</math> is an adjustable parameter determining the strength of the pinning. | |||
Under the action of the bias potential, the system equilibrates to the desired two-phase configuration. | |||
parameter <math> | An important observable is the difference between the average order parameter <math>\langle Q_6\rangle</math> in equilibrium and the desired order parameter <math>A</math>. | ||
This difference relates to the the chemical potentials of the solid <math>\mu_\text{solid}</math> and the liquid <math>\mu_\text{liquid}</math> phase | |||
<math> N(\mu_\ | :<math> | ||
N(\mu_\text{solid} - \mu_\text{liquid}) = | |||
\kappa (Q_{6,\text{solid}} - Q_{6,\text{liquid}})(\langle Q_6 \rangle - A) | |||
</math> | |||
where <math>N</math> is the number of atoms in the simulation. | where <math>N</math> is the number of atoms in the simulation. | ||
Computing the forces requires a differentiable <math>Q_6(\mathbf{R})</math>. | |||
<!-- PLEASE REPHRASE - I did not understand this part and how it relates to Q_6(R) --> | |||
In the VASP implementation a smooth fading function <math>w(r)</math> is used to weight each pair of atoms at distance <math>r</math> for the calculation of the <math>Q_6(\mathbf{R},w)</math> order parameter. This fading function is given as | |||
:<math> w(r) = \left\{ \begin{array}{cl} 1 &\textrm{for} \,\, r\leq n \\ | |||
<math> w(r) = \left\{ \begin{array}{cl} 1 &\textrm{for} \,\, r\leq n \\ | |||
\frac{(f^2 - r^2)^2 (f^2 - 3n^2 + 2r^2)}{(f^2 - n^2)^3} &\textrm{for} \,\, n<r<f \\ | \frac{(f^2 - r^2)^2 (f^2 - 3n^2 + 2r^2)}{(f^2 - n^2)^3} &\textrm{for} \,\, n<r<f \\ | ||
0 &\textrm{for} \,\,f\leq r \end{array}\right. </math> | 0 &\textrm{for} \,\,f\leq r \end{array}\right. </math> | ||
<!-- is w(r) equivalent to (1 - t)^2(1 + 2t) with t = (r - n) / (f - n)? --> | |||
Here <math>n</math> and <math>f</math> are the near- and far-fading distances, respectively. | |||
<!-- END REPHRASE --> | |||
The radial distribution function <math>g(r)</math> of the crystal phase yields a good choice for the fading range. | |||
To prevent spurious stress, <math>g(r)</math> should be small where the derivative of <math>w(r)</math> is large. | |||
Set the near fading distance <math>n</math> to the distance where <math>g(r)</math> goes below 1 after the first peak. | |||
Set the far fading distance <math>f</math> to the distance where <math>g(r)</math> goes above 1 again before the second peak. | |||
== How to == | |||
'''Interface pinning''' uses the <math>Np_zT</math> ensemble where the barostat only acts along the <math>z</math> direction. | |||
This ensemble uses a Langevin thermostat and a Parrinello-Rahman barostat with lattice constraints in the remaining two dimensions. | |||
The solid-liquid interface must be in the <math>x</math>-<math>y</math> plane perpendicular to the action of the barostat. | |||
Set the following tags for the '''interface pinning''' method: | |||
;{{TAG|OFIELD_Q6_NEAR}}: Defines the near-fading distance <math>n</math>. | |||
;{{TAG|OFIELD_Q6_FAR}}: Defines the far-fading distance <math>f</math>. | |||
;{{TAG|OFIELD_KAPPA}}: Defines the coupling strength <math>\kappa</math> of the bias potential. | |||
;{{TAG|OFIELD_A}}: Defines the desired value of the order parameter <math>A</math>. | |||
The following example {{TAG|INCAR}} file calculates the interface pinning in sodium{{cite|pedersen:prb:13}}: | |||
The following | |||
{{TAGBL|TEBEG}} = 400 # temperature in K | {{TAGBL|TEBEG}} = 400 # temperature in K | ||
{{TAGBL|POTIM}} = 4 # timestep in fs | {{TAGBL|POTIM}} = 4 # timestep in fs | ||
{{TAGBL|IBRION}} = 0 # | {{TAGBL|IBRION}} = 0 # run molecular dynamics | ||
{{TAGBL|ISIF}} = 3 # use Parrinello-Rahman barostat for the lattice | {{TAGBL|ISIF}} = 3 # use Parrinello-Rahman barostat for the lattice | ||
{{TAGBL|MDALGO}} = 3 # use Langevin thermostat | {{TAGBL|MDALGO}} = 3 # use Langevin thermostat | ||
{{TAGBL| | {{TAGBL|LANGEVIN_GAMMA_L}} = 3.0 # friction coefficient for the lattice degree of freedoms (DoF) | ||
{{TAGBL| | {{TAGBL|LANGEVIN_GAMMA}} = 1.0 # friction coefficient for atomic DoFs for each species | ||
{{TAGBL|PMASS}} = 100 # mass for lattice DoFs | {{TAGBL|PMASS}} = 100 # mass for lattice DoFs | ||
{{TAGBL|LATTICE_CONSTRAINTS}} = F F T # fix x | {{TAGBL|LATTICE_CONSTRAINTS}} = F F T # fix x-y plane, release z lattice dynamics | ||
{{TAGBL|OFIELD_Q6_NEAR}} = 3.22 # fading | {{TAGBL|OFIELD_Q6_NEAR}} = 3.22 # near fading distance for function w(r) in Angstrom | ||
{{TAGBL|OFIELD_Q6_FAR}} = 4.384 # in Angstrom | {{TAGBL|OFIELD_Q6_FAR}} = 4.384 # far fading distance for function w(r) in Angstrom | ||
{{TAGBL|OFIELD_KAPPA}} = 500 # strength of bias potential in eV/(unit of Q)^2 | {{TAGBL|OFIELD_KAPPA}} = 500 # strength of bias potential in eV/(unit of Q)^2 | ||
{{TAGBL|OFIELD_A}} = 0.15 # desired value of the Q6 order parameter | {{TAGBL|OFIELD_A}} = 0.15 # desired value of the Q6 order parameter | ||
== References == | |||
<references/> | |||
<noinclude> | |||
---- | ---- | ||
[[Category:VASP|Interface | [[Category:VASP|Interface pinning]][[Category:Molecular dynamics]] |
Revision as of 10:25, 18 October 2023
Interface pinning[1] is used to determine the melting point from a molecular-dynamics simulation of the interface between a liquid and a solid phase. The typical behavior of such a simulation is to freeze or melt, while the interface is pinned with a bias potential. This potential applies an energy penalty for deviations from the desired two-phase system. It is preferred simulating above the melting point because the bias potential prevents melting better than freezing.
The Steinhardt-Nelson[2] order parameter discriminates between the solid and the liquid phase. With the bias potential
penalizes differences between the order parameter for the current configuration and the one for the desired interface . is an adjustable parameter determining the strength of the pinning.
Under the action of the bias potential, the system equilibrates to the desired two-phase configuration. An important observable is the difference between the average order parameter in equilibrium and the desired order parameter . This difference relates to the the chemical potentials of the solid and the liquid phase
where is the number of atoms in the simulation.
Computing the forces requires a differentiable . In the VASP implementation a smooth fading function is used to weight each pair of atoms at distance for the calculation of the order parameter. This fading function is given as
Here and are the near- and far-fading distances, respectively.
The radial distribution function of the crystal phase yields a good choice for the fading range.
To prevent spurious stress, should be small where the derivative of is large.
Set the near fading distance to the distance where goes below 1 after the first peak.
Set the far fading distance to the distance where goes above 1 again before the second peak.
How to
Interface pinning uses the ensemble where the barostat only acts along the direction. This ensemble uses a Langevin thermostat and a Parrinello-Rahman barostat with lattice constraints in the remaining two dimensions. The solid-liquid interface must be in the - plane perpendicular to the action of the barostat.
Set the following tags for the interface pinning method:
- OFIELD_Q6_NEAR
- Defines the near-fading distance .
- OFIELD_Q6_FAR
- Defines the far-fading distance .
- OFIELD_KAPPA
- Defines the coupling strength of the bias potential.
- OFIELD_A
- Defines the desired value of the order parameter .
The following example INCAR file calculates the interface pinning in sodium[1]:
TEBEG = 400 # temperature in K POTIM = 4 # timestep in fs IBRION = 0 # run molecular dynamics ISIF = 3 # use Parrinello-Rahman barostat for the lattice MDALGO = 3 # use Langevin thermostat LANGEVIN_GAMMA_L = 3.0 # friction coefficient for the lattice degree of freedoms (DoF) LANGEVIN_GAMMA = 1.0 # friction coefficient for atomic DoFs for each species PMASS = 100 # mass for lattice DoFs LATTICE_CONSTRAINTS = F F T # fix x-y plane, release z lattice dynamics OFIELD_Q6_NEAR = 3.22 # near fading distance for function w(r) in Angstrom OFIELD_Q6_FAR = 4.384 # far fading distance for function w(r) in Angstrom OFIELD_KAPPA = 500 # strength of bias potential in eV/(unit of Q)^2 OFIELD_A = 0.15 # desired value of the Q6 order parameter
References
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